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moving to codeberg
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moving to codeberg
37 followers · 45 following

Achievements

Achievement: StarstruckAchievement: Public SponsorAchievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx2

Achievements

Achievement: StarstruckAchievement: Public SponsorAchievement: QuickdrawAchievement: YOLOAchievement: Pull Sharkx2

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KaiAragaki/README.txt 
EDUCATION
=========
|          WHAT           |         WHERE         |     WHEN    |
|-------------------------|-----------------------|-------------|
| Postdoc (Bioinformatics)| Lund University       | 2025 -      |
| PhD Pharmacology        | Johns Hopkins         | 2018 - 2024 |
| BS Biochemistry         | University of Arizona | 2014 - 2018 |

SKILLS
======
Solid experience in both wet- and dry-lab, particularly with cancer genomics.
Value reproducibility and clear explanations.
Will learn anything to get there.

NITTY GRITTY:
- 8yrs R/Tidyverse/Bioconductor/Shiny/RMarkdown/targets/pkg dev/etc...
- 8yrs pipettes/cell culture/spheroids/westerns/PCR/etc...
- Enough HTML/CSS/JS to kludge together websites (with a little D3 and Svelte for flavor)
- Currently: Python/Django/Docker
- Still learning all the time

INTERESTS
=========
- Reproducible science
- Bioinformatics
- Making packages to bridge the bench-to-keyboard chasm
- Mentoring
- Cats

SOME PROJECTS
================
Learn about the basics of digital image processing:
- https://pixels.kaibitz.com/

Bioinformatics mentoring materials:
- https://bioinfo.kaibitz.com/

Some R packages vignettes:
- https://kaiaragaki.github.io/gplate/articles/gp_for_data.html
- https://kaiaragaki.github.io/blotbench/articles/usage.html
- https://cran.r-project.org/web/packages/tidyestimate/vignettes/using-tidyestimate.html

Pinned Loading

  1. tidyestimate tidyestimate Public

    ESTIMATE tumor infiltration, the tidy way

    R 17 2

  2. gplate gplate Public

    A grammar of plates

    R 4

  3. amplify amplify Public

    Automate PCR Tasks Reproducibly

    R

  4. mop mop Public

    A broom-like interface for lab data

    R 1

  5. qp qp Public

    A toolbox for protein quantification experiments

    R

  6. reclanc reclanc Public

    R 1