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Hanjunmin/complex_region

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Human genome complexity and its biomedical insights from the pangenome graph

A repo for orignal code and methods related to analyses and figures generation for the complex region study

Four sections are included:

  1. Complex region decomposition: compelxity index generation and genome region classfication with eight complexity indices
  2. Association between diseases and complex Regions: premature test and 106 genomic disoder asscation
  3. Haplotype decomposition within complex regions: 22q11.2 and 2q13
  4. Pan-SD and Pan-VNTR study methods: metholgoies building and population-stratification analysis

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