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1. GTseq-Pipeline GTseq-Pipeline Public

   A series of perl and python scripts for generating genotypes from NGS fastq files from GTseq library sequencing.

   Perl 21 15

2. GTseek_utils GTseek_utils Public

   Utilities for analysis of multiplex amplicon sequencing data

   Perl 2

3. gtseq_microhap gtseq_microhap Public

   Identifies and genotypes microhaplotypes from GT-seq paired-end FASTQ data using a primers.csv file. Builds a catalog of unique alleles and calls genotypes across samples. Alignment-free except for…

   Python 1

4. Stacks_Utilities Stacks_Utilities Public

   Perl scripts utilizing Stacks output files from RAD sequencing projects.

   Perl