RStudio is an integrated development environment (IDE) for R

Official code repository for GATK versions 4 and up

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Accurate Species TRee ALgorithm

Jasmine: SV Merging Across Samples

🌺 reference-free transcriptome assembly for short and long reads

The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequence data.

The SPrime program identifies variants that are introgressed from archaic populations.

A coalsecent simulator with selection

Super fast variant caller for whole genome shotgun (WGS) sequencing data