A Diba lab repo for exploring position data using 3D visualization methods in Python/Jupyter-lab
Email me at halechr@umich.edu for more info.
Please Cite as:
@software{pho_hale_2022_6647483,
author = {Pho Hale},
title = {CommanderPho/Spike3D: v0.0.3},
month = jun,
year = 2022,
publisher = {Zenodo},
version = {0.0.3},
doi = {10.5281/zenodo.6647483},
url = {https://doi.org/10.5281/zenodo.6647483}
}
PS C:\Users\pho\repos\Spike3DWorkEnv\Spike3D> poetry install --all-extras --no-root --sync
Installing dependencies from lock file
Package operations: 0 installs, 1 update, 27 removals
- Removing absl-py (2.1.0)
- Removing astunparse (1.6.3)
- Removing flatbuffers (24.3.25)
- Removing google-pasta (0.2.0)
- Removing grpcio (1.65.4)
- Removing handsdown (2.1.0)
- Removing iniconfig (2.0.0)
- Removing keras (3.5.0)
- Removing libclang (18.1.1)
- Removing ml-dtypes (0.4.0)
- Removing mpmath (1.3.0)
- Removing namex (0.0.8)
- Removing opencv-python (4.10.0.84)
- Removing optree (0.12.1)
- Removing pluggy (1.5.0)
- Removing pyan (0.1.3)
- Removing pynndescent (0.5.13)
- Removing pyqt-responsive-label (0.0.3)
- Removing pytest (7.4.4)
- Removing snakeviz (2.2.0)
- Removing sympy (1.13.2)
- Removing tensorboard (2.17.0)
- Removing tensorboard-data-server (0.7.2)
- Removing termcolor (2.4.0)
- Removing torch (2.4.0)
- Removing torchvision (0.19.0)
- Removing typed-ast (1.5.5)
- Updating pyphoplacecellanalysis (0.2.2 C:/Users/pho/repos/Spike3DWorkEnv/pyPhoPlaceCellAnalysis -> 0.2.3 C:/Users/pho/repos/Spike3DWorkEnv/pyPhoPlaceCellAnalysis)
PS C:\Users\pho\repos\Spike3DWorkEnv\Spike3D>
uv add git+https://github.com/CommanderPho/pho_jupyter_preview_widget --tag v4.0.0
uv add ../pho_jupyter_preview_widget/dist/pho_jupyter_preview_widget-0.4.0-py3-none-any.whl
git clone -b feature/safe-advance https://github.com/CommanderPho/NeuroPy.git
git clone -b develop https://github.com/CommanderPho/pyPhoCoreHelpers.git
git clone -b develop https://github.com/CommanderPho/pyPhoPlaceCellAnalysis.git
neuropy = {git = "https://github.com/CommanderPho/NeuroPy.git", rev = "feature/safe-advance"}
pyphocorehelpers = {git = "https://github.com/CommanderPho/pyPhoCoreHelpers.git"}
pyphoplacecellanalysis = {git = "https://github.com/CommanderPho/pyPhoPlaceCellAnalysis.git", editable=true}