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A Diba lab repo for exploring position data using 3D visualization methods in Python/Jupyter-lab

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CommanderPho/Spike3D

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Spike3D DOI

A Diba lab repo for exploring position data using 3D visualization methods in Python/Jupyter-lab

Email me at halechr@umich.edu for more info.

Please Cite as:

@software{pho_hale_2022_6647483,
  author       = {Pho Hale},
  title        = {CommanderPho/Spike3D: v0.0.3},
  month        = jun,
  year         = 2022,
  publisher    = {Zenodo},
  version      = {0.0.3},
  doi          = {10.5281/zenodo.6647483},
  url          = {https://doi.org/10.5281/zenodo.6647483}
}

2024-09-27

PS C:\Users\pho\repos\Spike3DWorkEnv\Spike3D> poetry install --all-extras --no-root --sync
Installing dependencies from lock file

Package operations: 0 installs, 1 update, 27 removals

  - Removing absl-py (2.1.0)
  - Removing astunparse (1.6.3)
  - Removing flatbuffers (24.3.25)
  - Removing google-pasta (0.2.0)
  - Removing grpcio (1.65.4)
  - Removing handsdown (2.1.0)
  - Removing iniconfig (2.0.0)
  - Removing keras (3.5.0)
  - Removing libclang (18.1.1)
  - Removing ml-dtypes (0.4.0)
  - Removing mpmath (1.3.0)
  - Removing namex (0.0.8)
  - Removing opencv-python (4.10.0.84)
  - Removing optree (0.12.1)
  - Removing pluggy (1.5.0)
  - Removing pyan (0.1.3)
  - Removing pynndescent (0.5.13)
  - Removing pyqt-responsive-label (0.0.3)
  - Removing pytest (7.4.4)
  - Removing snakeviz (2.2.0)
  - Removing sympy (1.13.2)
  - Removing tensorboard (2.17.0)
  - Removing tensorboard-data-server (0.7.2)
  - Removing termcolor (2.4.0)
  - Removing torch (2.4.0)
  - Removing torchvision (0.19.0)
  - Removing typed-ast (1.5.5)
  - Updating pyphoplacecellanalysis (0.2.2 C:/Users/pho/repos/Spike3DWorkEnv/pyPhoPlaceCellAnalysis -> 0.2.3 C:/Users/pho/repos/Spike3DWorkEnv/pyPhoPlaceCellAnalysis)
PS C:\Users\pho\repos\Spike3DWorkEnv\Spike3D> 

2025-05-12


uv add git+https://github.com/CommanderPho/pho_jupyter_preview_widget --tag v4.0.0


uv add ../pho_jupyter_preview_widget/dist/pho_jupyter_preview_widget-0.4.0-py3-none-any.whl


git clone -b feature/safe-advance https://github.com/CommanderPho/NeuroPy.git
git clone -b develop https://github.com/CommanderPho/pyPhoCoreHelpers.git
git clone -b develop https://github.com/CommanderPho/pyPhoPlaceCellAnalysis.git



neuropy = {git = "https://github.com/CommanderPho/NeuroPy.git", rev = "feature/safe-advance"}
pyphocorehelpers = {git = "https://github.com/CommanderPho/pyPhoCoreHelpers.git"}
pyphoplacecellanalysis = {git = "https://github.com/CommanderPho/pyPhoPlaceCellAnalysis.git", editable=true}


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A Diba lab repo for exploring position data using 3D visualization methods in Python/Jupyter-lab

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