[BUG] Error: Upload log columns are incorrect. Cannot process submissions. Error: Unable to pretty print pandera error message for data. Error message is: #131
Description
Describe the bug
docker run --rm -v $PWD:/data seqsender bash /seqsender/seqsender-kickoff submit -b -n --organism FLU --submission_name VSP007B --submission_dir /data --config_file /data/seqsender_config2025.yaml --metadata_file /data/VSP007B_meta_fluA.csv --fasta_file /data/VSP007B_alls.fa
I am using the latest tag and still getting this same error:
Creating submission files for BIOSAMPLE
Files are stored at: /data/VSP007B/submission_files/BIOSAMPLE
Creating submission files for GENBANK
Files are stored at: /data/VSP007B/submission_files/GENBANK
Error: file /data/submission_log.csv has the following error('s):
(Note: Index position is calculated excluding column headers and the first row index value starting at '1'.)
Pandas(Index=0, schema_context='Column', column='Submission_ID', check="str_matches('^(PENDING|SUBMITTED|\WSUB\d+\W)$')", check_number=0, failure_case='VALIDATED', index=27)
Error: Upload log columns are incorrect. Cannot process submissions.
Error: Unable to pretty print pandera error message for data. Error message is:
Column: Submission_ID
Index: 28
Value: VALIDATED
Validator: str_matches('^(PENDING|SUBMITTED|\WSUB\d+\W)$')
Logs
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Version
- Version Number: [e.g. v1.2.0.]
- SeqSender Version: [e.g. Singularity, Docker, Script]
- OS [e.g. Linux, Mac]
Additional context
Add any other context about the problem here.