This software requires the CMIG core utilities, which should be cloned alongside this repo:

git clone https://github.com/cmig-research-group/cmig_core_utils.git cmig_utils && \
git clone https://github.com/ChristopherConlin/rsi_prostate.git

after checking this out, cd to the rsi_prostate dir and run make install to copy files into that data directory.

Then you can run make to build the program. After that you can test it with some test files with the make run command.

You will need to modify the makefile to point to the test files you have put in the data directory.