University Medicine Essen
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FHIR-PYrate
FHIR-PYrate PublicFHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter reso…
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saros-dataset
saros-dataset PublicSparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data
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Body-and-Organ-Analysis
Body-and-Organ-Analysis PublicBOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical …
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Repositories
- Body-and-Organ-Analysis Public
BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical images and identifying the different structures within the human body, including bones, muscles, organs, and blood vessels.
UMEssen/Body-and-Organ-Analysis’s past year of commit activity - AutoPathO Public
A Python Project for Training Encoder and Inferencing LLMs for the Prediction of ICD-O Codes using Pathology Reports.
UMEssen/AutoPathO’s past year of commit activity - DeidentiFHIR-Pipeline Public
With the DeidentiFHIR-Pipeline, you can transfer FHIR based data from one source (e.g. a FHIR server) to a target (e.g. a FHIR server) and pseudonymize the data in between. Pseudonymization is based on the DeidentiFHIR library.
UMEssen/DeidentiFHIR-Pipeline’s past year of commit activity - MumbleMED Public
MumbleMED is an AI‑native pipeline for generating medical speech datasets to fine‑tune ASR models. It pairs an LLM for clinically realistic text normalization with TTS‑based speech synthesis, then builds train/val/test splits ready for Whisper‑style fine‑tuning.
UMEssen/MumbleMED’s past year of commit activity - FHIR-PYrate Public
FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter resources using RegEx and SpaCy and download DICOM studies and series.
UMEssen/FHIR-PYrate’s past year of commit activity - aipal-validation Public
UMEssen/aipal-validation’s past year of commit activity - SALT Public
Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hierarchical relationships in the data.
UMEssen/SALT’s past year of commit activity
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