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@bhklab

BHKLAB

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre
README.md

Mission

Our overarching goal consists of developing cutting-edge computational tools and predictive models to identify new cancer vulnerabilities and improve the way precision oncology is delivered to patients.

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  1. PharmacoGx PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 71 26

  2. med-imagetools med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    Python 56 10

  3. AnnotationGx AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    R 2 1

  4. readii readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    Jupyter Notebook 5

  5. orcestra-downloader orcestra-downloader Public

    Seamless CLI access to orcestra datasets

    Python 1

  6. handbook handbook Public

    Lab Handbook For BHKLab

    4

Repositories

Showing 10 of 236 repositories
  • bhklab-website Public

    BHK Lab website

    bhklab/bhklab-website’s past year of commit activity
    JavaScript 0 0 7 2 Updated Jan 20, 2026
  • Science-portal Public
    bhklab/Science-portal’s past year of commit activity
    TypeScript 0 0 3 0 Updated Jan 20, 2026
  • science-portal-mailing Public
    bhklab/science-portal-mailing’s past year of commit activity
    Python 0 1 2 1 Updated Jan 20, 2026
  • PredictIO_Nextflow Public

    Nextflow pipeline for pan-cancer immunotherapy biomarker discovery using transcriptomic data

    bhklab/PredictIO_Nextflow’s past year of commit activity
    Nextflow 0 0 0 0 Updated Jan 19, 2026
  • med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    bhklab/med-imagetools’s past year of commit activity
    Python 56 MIT 10 30 (1 issue needs help) 5 Updated Jan 13, 2026
  • aaura-bench-preprocess Public

    Preprocessing of datasets for use in the AAuRA Benchmarking tool.

    bhklab/aaura-bench-preprocess’s past year of commit activity
    Jupyter Notebook 0 0 0 1 Updated Jan 12, 2026
  • aircheck-sgc-taget2035 Public

    Aircheck is a platform for high quality and structured data to enable the prediction of small molecules interactions with proteins using AI/ML.

    bhklab/aircheck-sgc-taget2035’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 12, 2026
  • MedSAM2-RECIST Public Forked from medfm-flare/MedSAM2-RECIST

    Docker-based MedSAM2 inference pipeline for MICCAI FLARE25 Task1-PancancerRECIST-to-3D

    bhklab/MedSAM2-RECIST’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Jan 8, 2026
  • conformal-ffs Public

    Feature selection to find an optimal subset of features

    bhklab/conformal-ffs’s past year of commit activity
    Jupyter Notebook 0 0 0 1 Updated Jan 8, 2026
  • recist-vs-reality Public

    Development of the AI-Augmented Response Assessment

    bhklab/recist-vs-reality’s past year of commit activity
    Jupyter Notebook 0 0 0 2 Updated Jan 7, 2026
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