From 7b71c2a1f84d528e69ec64e35b7a47be6a1c00d9 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 6 Oct 2025 19:05:40 +0000
Subject: [PATCH] [pre-commit.ci] pre-commit autoupdate
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updates:
- [github.com/pre-commit/pre-commit-hooks: v5.0.0 → v6.0.0](https://github.com/pre-commit/pre-commit-hooks/compare/v5.0.0...v6.0.0)
- [github.com/astral-sh/ruff-pre-commit: v0.12.2 → v0.13.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.12.2...v0.13.3)
- [github.com/snakemake/snakefmt: v0.11.0 → v0.11.2](https://github.com/snakemake/snakefmt/compare/v0.11.0...v0.11.2)
---
 .pre-commit-config.yaml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 088509eb..8d35ba3a 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -8,7 +8,7 @@ ci:
 
 repos:
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v5.0.0
+  rev: v6.0.0
   hooks:
   - id: check-merge-conflict
   - id: check-added-large-files
@@ -17,7 +17,7 @@ repos:
 # Run ruff to lint and format
 - repo: https://github.com/astral-sh/ruff-pre-commit
   # Ruff version.
-  rev: v0.12.2
+  rev: v0.13.3
   hooks:
     # Run the linter.
   - id: ruff
@@ -44,6 +44,6 @@ repos:
 
   # Format Snakemake rule / workflow files
 - repo: https://github.com/snakemake/snakefmt
-  rev: v0.11.0
+  rev: v0.11.2
   hooks:
   - id: snakefmt