@ipotterill

[1] fastq-dl

[2] Trimmomatic

[3] FastQC

[4] bart

[5] snippy

[6] panaroo: An updated pipeline for pangenome investigation

[7] eggNOG

[8] Circos: An information aesthetic for comparative genomics

[9] Mashtree: a rapid comparison of whole genome sequence files

[10] Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

[11] The Complete Genome Sequence of Escherichia coli EC958: A High Quality Reference Sequence for the Globally Disseminated Multidrug Resistant E. coli O25b:H4-ST131 Clone