Aleksandr Smetanin

Aleksandr Smetanin

Amsterdam, North Holland, Netherlands
1K followers 500+ connections

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About

Data Scientist and Machine Learning Engineer
> 5+ years of experience in Data…

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Experience

Education

Licenses & Certifications

Projects

  • IsoQuant

    - Present

    IsoQuant is a tool for reference-based analysis of long RNA reads, such as PacBio or Oxford Nanopores. IsoQuant maps reads to the reference genome and assigns them to the annotated isoforms based on their intron and exon structure. IsoQuant is also capable of discovering various modifications, such as intron retention, alternative splice sites, skipped exons etc. IsoQuant further performs gene, isoform, exon and intron quantification. If reads are grouped (e.g. according to cell type), counts…

    IsoQuant is a tool for reference-based analysis of long RNA reads, such as PacBio or Oxford Nanopores. IsoQuant maps reads to the reference genome and assigns them to the annotated isoforms based on their intron and exon structure. IsoQuant is also capable of discovering various modifications, such as intron retention, alternative splice sites, skipped exons etc. IsoQuant further performs gene, isoform, exon and intron quantification. If reads are grouped (e.g. according to cell type), counts are reported according to the provided grouping. In addition, IsoQuant generates discovered transcript models, including novel ones.

    See project

Languages

  • English

    Full professional proficiency

  • Russian

    Native or bilingual proficiency

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