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Commits on Dec 16, 2014

• fixed problem when computing bin averages. Before, the result always included one base pair more

  fidelram

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• fixed problem when computing bin averages. Before, the result always included one base pair more

  fidelram

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Commits on Nov 6, 2014

• Unified the plotting of heatmaps from bigwigCorrelate and bamCorrelate. Added option to include/remove correlation numbers. Fixed issue with bigwigCorrelate that caused a block

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Commits on Nov 5, 2014

• Update parserCommon.py

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• Update computeMatrix

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Commits on Oct 29, 2014

• Reorganized usage parameters

  fidelram

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• Merge branch 'master' of https://github.com/fidelram/deepTools

  fidelram

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  351b4fb

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• Fixed typo in bamCorrelate help message

  fidelram

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Commits on Oct 28, 2014

• update of image

  

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• image thumbnails update

  

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• more images for the gallery

  

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Commits on Oct 23, 2014

• updated image

  

  friedue

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• adding new gallery images

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Commits on Oct 7, 2014

• Fixed issue #63

  fidelram

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Commits on Sep 24, 2014

• fixed issue #62

  fidelram

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Commits on Sep 9, 2014

• updated version number to reflect fix update

  fidelram

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  351890e

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• FIX: bamCorrelate in bed mode was not always considering the whole bed region, only a one bp region.

  fidelram

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Commits on Sep 8, 2014

• added CHANGES.txt file

  fidelram

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Commits on Sep 5, 2014

• rename the bin file

  bgruening

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• addressing issue #59. Now an error message is given when few valid regions are found

  fidelram

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  ea2d52d

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• improved error message

  fidelram

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• add bamPEFragmentSize wrapper

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• rename PE_fragment_size to bamPEFragmentSize

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• rename PE_fragment_size to bamPEFragmentSize

  bgruening

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• add new option to bamCoverage

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Commits on Sep 4, 2014

• NEW: add parameter missingDataAsZero to bamCoverage. The default behaviour is unchanged.

  fidelram

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• added better warning message

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Commits on Sep 3, 2014

• set zerosToNans=True, such that the optional parameter missingDataAsZero, behaves as expected

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Commits on Aug 26, 2014

• upgrade to recent deepTools versions, add citation tags and include new pseudocount argument

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Commits on Aug 22, 2014

• increased version to reflect the change

  fidelram

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• fix problem with pseudocounts

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Commits on Jul 7, 2014

• removed merge tag in writeBedGraph.py

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Commits on Jul 1, 2014

• NEW: added the option to center reads when using bamCoverage or bamCompare. Fixed scale factors in bigwigCompare

  fidelram

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Commits on Jun 24, 2014

• add missing coma

  fidelram

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Commits on Jun 16, 2014

• bigwigCompare was incorrectly handling missing data.

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