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Commits on Dec 19, 2024

• Refractor esmScore_inFrame_av.py to greatly improve the performance

  yangyxt

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• Refractor esmScore_frameshift_av.py to greatly improve the performance

  yangyxt

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• Refractor esmScore_inFrame_av.py to greatly improve the performance

  yangyxt

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Commits on Dec 17, 2024

• optimize tabix indexing check

  yangyxt

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• remove the temp_dir clean part

  yangyxt

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Commits on Dec 16, 2024

• fix a syntax error

  yangyxt

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• update Snakefile and adding a thread argument for checkpoint process

  yangyxt

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• add logging lines

  yangyxt

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• add a log line to show the used thread number

  yangyxt

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• migrate to python 2.7

  yangyxt

  committed
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• close stdin if needed

  yangyxt

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• add parallel prescore extraction

  yangyxt

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Commits on Nov 22, 2024

• Merge pull request #80 from yangyxt/fix/yangyxt/snakefile-update

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  visze

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• correct formating (snakefmt) of Snakefile

  visze

  committed
  13d55e7

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• correct input paths and make annotate_mmsplice conditional

  yangyxt

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Commits on Nov 14, 2024

• fix esm env

  visze

  committed
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Commits on Nov 13, 2024

• Merge pull request #76 from kircherlab/fix/conda_nodefaults

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  visze

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• update readme

  visze

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Commits on Nov 8, 2024

• Merge branch 'fix/conda_nodefaults' of https://github.com/kircherlab/CADD-scripts into fix/conda_nodefaults

  visze

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• Add correct VCF header to let regseq run

  visze

  committed
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• removing mamba

  visze

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Commits on Nov 7, 2024

• update readme

  visze

  committed
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• update to nodefaults, restrict to sakemake 8

  visze

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Commits on Aug 23, 2024

• skiping header in novel VCF file\n check for empty file

  visze

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Commits on Jul 16, 2024

• Merge pull request #70 from kircherlab/feat/containerize

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  visze

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Commits on Jul 15, 2024

• update readme

  visze

  committed
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Commits on Jul 12, 2024

• chore: Refactor CADD.sh script for improved singularity/apptainer arguments handling

  

  Max

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Commits on Jul 9, 2024

• Merge branch 'feat/containerize' of https://github.com/kircherlab/CADD-scripts into feat/containerize

  

  Max Schubach

  committed
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• contanierize readme and install, caddsh script

  

  Max Schubach

  committed
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• deleted file in prescore rule

  visze

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Commits on Jun 24, 2024

• new esm env

  visze

  committed
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Commits on Jun 12, 2024

• feat: containerized Snakefile

  visze

  committed
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• feat: Dockerfile with working environments

  visze

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Commits on Apr 25, 2024

• Merge pull request #65 from kircherlab/visze-patch-1

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  visze

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• fix: environment creating error during install

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