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Commits on Jul 24, 2018

• Warn if the return status of VCF I/O functions is not checked, as discussed in #740

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  pd3

  authored and

  daviesrob

  committed
  5bc1a7e

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Commits on Jul 23, 2018

• Repeated calling of bcf_empty() must not segfault

  pd3

  committed
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Commits on Jul 18, 2018

• Merge version number bump and NEWS file from master

  daviesrob

  committed
  a4910bf

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• Release 1.9

  daviesrob

  committed
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Commits on Jul 16, 2018

• NEWS update

  daviesrob

  committed
  6cd9f24

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• Corrected rans normalisation bug introduced in 4ef6c76f.

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  jkbonfield

  committed
  db67856

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• Fixes a multi-threading cram decode bug.

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  jkbonfield

  authored and

  daviesrob

  committed
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Commits on Jul 13, 2018

• NEWS updates

  daviesrob

  committed
  2050db4

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• Additional installation hints for dependencies.

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  jkbonfield

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  daviesrob

  committed
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Commits on Jul 11, 2018

• Fix memory leak in `test_realn`.

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  valeriuo

  committed
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Commits on Jul 9, 2018

• Add NULL checks to sam_hdr_read(), sam_hdr_write(); add checks to test/sam.c copy_check_alignment() (#730)

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  daviesrob

  authored and

  jkbonfield

  committed
  0c0623f

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• Fix memory leak in test_bgzf

  daviesrob

  committed
  6565adf

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Commits on Jul 4, 2018

• Update dates in LICENSE file

  daviesrob

  committed
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• Add copyright boilerplate to test/test_realn.c

  daviesrob

  committed
  b8ac3e3

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• Update dependencies and htslib*.mk variables

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  jmarshall

  committed
  4f115b9

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Commits on Jul 2, 2018

• NEWS updates

  daviesrob

  committed
  caed43e

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• Minor man page formatting fixes

  

  jmarshall

  authored and

  daviesrob

  committed
  dd49c38

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Commits on Jun 29, 2018

• Bump SAM_FORMAT_VERSION to 1.6

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  daviesrob

  committed
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Commits on Jun 28, 2018

• Fix mingw printf format warnings

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  daviesrob

  committed
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• Remove trailing whitespace

  daviesrob

  committed
  a285d85

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Commits on Jun 20, 2018

• FASTQ information added.

  

  whitwham

  authored and

  daviesrob

  committed
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Commits on Jun 19, 2018

• Adds a level=%d option to hts_set_opt.

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  jkbonfield

  authored and

  daviesrob

  committed
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Commits on Jun 18, 2018

• Allow fai_build_core to handle blank lines with cr-lf ending.

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  daviesrob

  committed
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• Fix the test run on Windows and AppVeyor.

  

  valeriuo

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  daviesrob

  committed
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Commits on Jun 13, 2018

• Amendment to b39e724 reference error messages.

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  jkbonfield

  committed
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Commits on Jun 12, 2018

• Modifies faidx to work on FASTQ

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  whitwham

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  daviesrob

  committed
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Commits on Jun 8, 2018

• Fix off by one bug introduced in a13ac99.

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  jkbonfield

  committed
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Commits on Jun 7, 2018

• Allows make distclean to work, even if configure failed.

  daviesrob

  committed
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Commits on Jun 6, 2018

• Prevent make from working after configure errors

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  jmarshall

  committed
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Commits on Jun 4, 2018

• Report the reason for failing to open a reference.

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  jkbonfield

  authored and

  daviesrob

  committed
  b39e724

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Commits on May 24, 2018

• Optimisation for mutithreaded uncompressed bgzf

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  daviesrob

  committed
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• Faster writing of uncompressed data for builds without libdeflate

  daviesrob

  committed
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• Improve hwrite efficiency for large writes when the buffer is empty

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  daviesrob

  committed
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• Only signal input queue not full if it really is not full

  daviesrob

  committed
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• Only broadcast result_avail if it's the next one to be picked up

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  daviesrob

  committed
  979e6f2

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