ttriche
Follow
Stars
Free and Open Source, Distributed, RESTful Search Engine
Apache Druid: a high performance real-time analytics database.
OpenRefine is a free, open source power tool for working with messy data and improving it
Official code repository for GATK versions 4 and up
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository
A Java API for high-throughput sequencing data (HTS) formats.
Dead-simple vertical partitioning, compression, appends, and consolidation of data on a distributed filesystem.
Suite of parallel iterative algorithms built on top of Iterative Reduce
MuTect -- Accurate and sensitive cancer mutation detection
BioFabric is an open-source network visualization tool
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
This repository holds the companion project to Goby3, used to train and evaluate deep learning models to call variations. This repository contains the Matcha framework to help train and evaluate de…
RTG Core: Software for alignment and analysis of next-gen sequencing data.
Experimental logistic regression code supporting multiple result categories, many levels of categorical modeling variables, good optimization, L2 regularization and more.
A web scraper to download intraday Fitbit data (previously) unavailable in the official API
A Feature Density Estimator for High-Throughput Sequence Tags
Collection of scripts for working with Wiggle files and analyzing sequencing data
MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combination of sequencing platforms.
Spectral learning for Annotating Chromatin Labels and Epigenomes