Commits

Branch selector

 develop

User selector

All users

All time

Commit History

Commits on Aug 23, 2018

• Merge branch 'master' into develop

  imedina

  committed
  e36efe9

  Copy full SHA for e36efe9

• Prepare new release 4.6.0

  imedina

  committed
  5d743ff

  Copy full SHA for 5d743ff

Commits on Aug 2, 2018

• Upgrade version to 4.5.6

  imedina

  committed
  91e0e23

  Copy full SHA for 91e0e23

• feature-normalise-clinical-variants: VariantAnnotationCalculatorTest fixed

  javild

  committed
  b3757c3

  Copy full SHA for b3757c3

• Merge branch 'develop' into feature-normalise-clinical-variants

  javild

  committed
  45f5f8d

  Copy full SHA for 45f5f8d

• feature-normalise-clinical-variants: couple of bugs fixed. Tests added to VariantAnnotationCalculatorTest to check clinical annotation of un-normalised variants

  javild

  committed
  2f96e05

  Copy full SHA for 2f96e05

Commits on Aug 1, 2018

• Merge branch 'feature-normalise-clinical-variants' of https://github.com/opencb/cellbase into feature-normalise-clinical-variants

  javild

  committed
  e2453ba

  Copy full SHA for e2453ba

• feature-normalise-clinical-variants: adding new test for clinical annotation of un-normalised variants

  javild

  committed
  c5b7d98

  Copy full SHA for c5b7d98

Commits on Jul 30, 2018

• Merge branch 'hotfix-4.5.x' into develop

  javild

  committed
  2ce5097

  Copy full SHA for 2ce5097

• feature-normalise-clinical-variants: VA can now use CellBase genome sequence for left align during normalisation

  javild

  committed
  a3ff4b2

  Copy full SHA for a3ff4b2

• hotfix-4.5.x: new test added to VariantAnnotationCalculatorTest to check normalisation of mitochondrial chromosome name chrM -> MT

  javild

  committed
  0c61d5f

  Copy full SHA for 0c61d5f

Commits on Jul 27, 2018

• feature-normalise-clinical-variants: making LeftAligner use CellBase ref genome

  javild

  committed
  c812027

  Copy full SHA for c812027

Commits on Jul 26, 2018

• feature-normalise-clinical-variants: ClinicalVariantParserTest includes now a test for normalised variants

  javild

  committed
  8dfa9cc

  Copy full SHA for 8dfa9cc

Commits on Jul 20, 2018

• feature-normalise-clinical-variants: data for the new clinicalVariantTest ready. Implementation to be finished

  javild

  committed
  48fd3da

  Copy full SHA for 48fd3da

Commits on Jul 12, 2018

• feature-normalise-clinical-variants: bug fixed. One test added, needs debugging

  javild

  committed
  3309c3a

  Copy full SHA for 3309c3a

Commits on Jul 9, 2018

• feature-normalise-clinical-variants: implementing unittest

  javild

  committed
  81207d5

  Copy full SHA for 81207d5

Commits on Jul 5, 2018

• feature-normalise-clinical-variants: few errors fixed. Some code style fixes.

  javild

  committed
  ddb2771

  Copy full SHA for ddb2771

• feature-normalise-clinical-variants: first implementation approach ready. Needs debugging and tests need to be implemented.

  javild

  committed
  687e53e

  Copy full SHA for 687e53e

Commits on Jun 26, 2018

• Merge branch 'feature-va-left-align' of https://github.com/opencb/cellbase into feature-va-left-align

  javild

  committed
  9d9ce59

  Copy full SHA for 9d9ce59

• feature-va-left-align: done.

  javild

  committed
  3164a39

  Copy full SHA for 3164a39

• Merge branch 'develop' into feature-va-left-align

  javild

  committed
  5541814

  Copy full SHA for 5541814

Commits on Jun 15, 2018

• feature-va-left-align: implementation of left align normalisation in VA CLI started

  javild

  committed
  84ba60d

  Copy full SHA for 84ba60d

Commits on Jun 14, 2018

• Merge pull request #381 from dapregi/pycellbase-notebook

  Show description for d014820
  imedina

  authored
  d014820

  Copy full SHA for d014820

Commits on Jun 13, 2018

• updated docs

  dapregi

  committed
  c7d4a3b

  Copy full SHA for c7d4a3b

Commits on Jun 12, 2018

• updated readme

  dapregi

  committed
  5f7c740

  Copy full SHA for 5f7c740

• fixed hyperlinks

  dapregi

  committed
  344b3f9

  Copy full SHA for 344b3f9

• fixed hyperlinks

  dapregi

  committed
  ec064e7

  Copy full SHA for ec064e7

• fixed html bold font

  dapregi

  committed
  1f2e0ad

  Copy full SHA for 1f2e0ad

• fixed html bold font

  dapregi

  committed
  9e958fa

  Copy full SHA for 9e958fa

• added notebook

  dapregi

  committed
  9e436d7

  Copy full SHA for 9e436d7

Commits on May 15, 2018

• Merge branch 'hotfix-4.5.x' into develop

  javild

  committed
  5910687

  Copy full SHA for 5910687

Commits on May 11, 2018

• hotfix-4.5.x: clinvar source files updated to May 2018

  javild

  committed
  a7c3530

  Copy full SHA for a7c3530

Commits on May 10, 2018

• Merge pull request #377 from dapregi/pycellbase-fix-version

  Show description for f4f1173
  javild

  authored
  f4f1173

  Copy full SHA for f4f1173

• fix version

  dapregi

  committed
  14c73e0

  Copy full SHA for 14c73e0

• Merge pull request #376 from dapregi/pycellbase-rework

  Show description for 593ec23
  javild

  authored
  593ec23

  Copy full SHA for 593ec23