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Commits on Feb 26, 2025

• Merge pull request #237 from raphael-group/gccorrect-fix

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  RunpengLuo

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Commits on Feb 24, 2025

• ruff code format

  

  RunpengLuo

  committed
  a8aed80

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• force #CHR be str type in gccorrect.py

  

  RunpengLuo

  committed
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Commits on Jan 15, 2025

• Merge pull request #234 from raphael-group/bcftools-bugfix

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  RunpengLuo

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Commits on Nov 22, 2024

• #231:fix hatchet.ini typo

  

  RunpengLuo

  committed
  ecbd52f

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• #227:fix AD to INFO/AD and sp deadlock bug

  

  RunpengLuo

  committed
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Commits on Oct 15, 2024

• pinning numpy<2 (#230)

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  vineetbansal

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Commits on May 2, 2024

• Merge pull request #218 from uclahs-cds/tyamaguchi-ucla-convertStringNone

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  mmyers1

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Commits on Apr 26, 2024

• Merge pull request #215 from raphael-group/clustering-gaps

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  mmyers1

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• Convert string None to Python None

  tnyamaguchi

  committed
  c8a67c9

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Commits on Apr 11, 2024

• Add flag for cluster-bins to allow multiple gaps per chromosome

  mmyers1

  committed
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Commits on Apr 10, 2024

• Merge pull request #207 from raphael-group/revisions

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  mmyers1

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Commits on Apr 6, 2024

• Merge pull request #212 from raphael-group/bic_criterion

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  mmyers1

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  afd401c

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• best score selection consistency

  

  Metin Balaban

  committed
  732b1e0

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• formatting

  mmyers1

  committed
  a2b50d9

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• Merge pull request #211 from raphael-group/fix_purity_nosegmentation

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  mmyers1

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Commits on Apr 5, 2024

• flake8

  

  Metin Balaban

  committed
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• default hmm number of states selection criteria is bic

  

  Metin Balaban

  committed
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• user can input purity values

  

  Metin Balaban

  committed
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Commits on Apr 3, 2024

• missed a merge conflict oops

  mmyers1

  committed
  6cf1385

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• Merge branch 'master' of github.com:raphael-group/hatchet into revisions

  mmyers1

  committed
  1dc0738

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• formatting

  mmyers1

  committed
  4bd571f

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• Merge pull request #200 from raphael-group/pandasdepr

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  mmyers1

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• Merge pull request #210 from raphael-group/gc_correction

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  mmyers1

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  cce2869

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• blue reformat

  

  Metin Balaban

  committed
  785a4dd

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• flake8

  

  Metin Balaban

  committed
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• change test outputs for some test cases

  

  Metin Balaban

  committed
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• bedtools must be in the PATH

  

  Metin Balaban

  committed
  0e2fa62

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• add bedtools path to PATH

  

  Metin Balaban

  committed
  4dc0c2b

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• bedtools dependency checks

  

  Metin Balaban

  committed
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Commits on Apr 2, 2024

• pybedtools dependency

  

  Metin Balaban

  committed
  d54d2e0

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• gc correction, disallow (0,0), new config defaults

  

  Metin Balaban

  committed
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Commits on Mar 29, 2024

• Merge branch 'revisions' of github.com:raphael-group/hatchet into revisions

  mmyers1

  committed
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• bugfix: correct-haplotypes length of values vs index issue

  mmyers1

  committed
  41d7ce0

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Commits on Feb 19, 2024

• Merge remote-tracking branch 'origin' into revisions

  mmyers1

  committed
  e4a5d3c

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