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Commits on Oct 18, 2012

• Hibernate version reverted to 3.6.10

  

  imedina

  committed
  7b6037e

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Commits on Oct 4, 2012

• HIbernate 4.1.7 in use

  

  imedina

  committed
  56d0784

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Commits on Sep 18, 2012

• pom.xml: update ti HIbernate 4.1.7

  

  imedina

  committed
  f8f2032

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Commits on Sep 7, 2012

• Many new methods and performance improveements

  

  imedina

  committed
  9257819

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Commits on Jun 29, 2012

• SNPs by Region comes from snp table now

  

  imedina

  committed
  3384ece

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• SnpRegulatoryConsequenceType added

  

  imedina

  committed
  ad334ad

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• Main changes:

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  imedina

  committed
  c778b63

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Commits on Jun 14, 2012

• SnpPhenotypeAnnotation and MutationPhenotypeAnnotation have been completed

  

  imedina

  committed
  6bbfe4c

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• Configuration changes, now default version works properly

  

  imedina

  committed
  a3f4dc8

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Commits on Jun 5, 2012

• Hibernate Application Properties

  

  imedina

  committed
  61e29c3

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Commits on May 29, 2012

• Bugfix: 5'-UTR exon do not get consequence_type when position is in coding part

  

  imedina

  committed
  3de61be

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Commits on May 28, 2012

• ProteinRegion.java added

  

  imedina

  committed
  b66530f

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• GenomicToProtein initial work

  

  imedina

  committed
  ade166d

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• Merge branch 'next' of git://mbleda/infrared-lib into next

  

  imedina

  committed
  d33619e

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• ProteinDBAdaptor: interactome methods added

  

  imedina

  committed
  16ba26d

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• GenomicRegionFeature: added method getFeatureMapsByRegion

  mbleda

  committed
  96e6e0d

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Commits on May 18, 2012

• Gene and Transcript adaptors now use xref data to search for names

  

  imedina

  committed
  a56acda

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Commits on May 17, 2012

• Bugfix in GenomeSequenceHibernateDBAdaptor

  

  imedina

  committed
  60d2fa8

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Commits on May 16, 2012

• Regulatory and core filters added

  

  imedina

  committed
  34929c2

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• Filters added in gene/list

  mbleda

  committed
  cb4e4bf

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Commits on May 15, 2012

• Filters added in TFBS, mirna_gene and mirna_mature

  mbleda

  committed
  d680004

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• Filters added in TFBS, mirna_gene and mirna_mature

  mbleda

  committed
  3714a30

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Commits on May 14, 2012

• Some TFBS filters added

  mbleda

  committed
  7e96991

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Commits on May 10, 2012

• added NPE checks

  frasator

  committed
  e3d6817

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• NPE avoided in many places

  

  imedina

  committed
  5e23340

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• returning null or [] if not found

  frasator

  committed
  8a9362f

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• null check on transcript gene and snp HibernateDBAdaptor

  frasator

  committed
  e4ba431

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• Merge branch 'next' of git://rsanchez/infrared-lib into next

  frasator

  committed
  9fab19b

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• Merge branch 'next' of git://imedina/infrared-lib into next

  rubsan

  committed
  c00a680

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• fixed some bugs

  rubsan

  committed
  0112431

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• ToString commented out

  

  imedina

  committed
  c54bf54

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• null check on exonHibernateDBAdaptor and transcriptHibernateDBadaptor

  frasator

  committed
  a773a39

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Commits on May 9, 2012

• GenomicVariantEffectHibernateDBAdaptor: NPE fixed

  

  imedina

  committed
  8eb56ce

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Commits on May 4, 2012

• Some species addded

  

  imedina

  committed
  14ba507

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Commits on Apr 4, 2012

• SnpWSServer and SnpHibernateDBAdapter new methods

  frasator

  committed
  e590629

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