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[pull] master from aces:master #79

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Merged
pull merged 2 commits into from
Jan 23, 2026
Merged

[pull] master from aces:master #79

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e6c5246
Runtime info script now runs from task workdir
prioux Jan 22, 2026
02d9156
Merge branch 'master' of github.com:aces/cbrain
prioux Jan 22, 2026
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10 changes: 9 additions & 1 deletion BrainPortal/app/models/cluster_task.rb
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Original file line number Diff line number Diff line change
Expand Up @@ -1835,6 +1835,12 @@ def submit_cluster_job
io.write( science_script )
end

# Copy the runtime_info.sh script
rt_info_script = "#{Rails.root.to_s.bash_escape}/vendor/cbrain/bin/runtime_info.sh"
if File.exists?(rt_info_script) && ! File.exists?(".runtime_info.sh")
FileUtils.copy(rt_info_script, ".runtime_info.sh")
end

# Create the QSUB wrapper script which is going to be submitted
# to the cluster.
qsub_script = <<-QSUB_SCRIPT
Expand Down Expand Up @@ -1865,7 +1871,9 @@ def submit_cluster_job
date '+CBRAIN Task Starting At %s : %F %T' 1>&2

# Record runtime environment
bash #{Rails.root.to_s.bash_escape}/vendor/cbrain/bin/runtime_info.sh > #{runtime_info_basename}
if test -e .runtime_info.sh ; then
bash .runtime_info.sh > #{runtime_info_basename}
end

# With apptainer/singularity jobs, we sometimes get an error booting the container,
# so we try up to five times.
Expand Down
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