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Commits on Nov 3, 2022

• Merge branch 'deepmind:main' into main

  luisas

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Commits on Nov 1, 2022

• Update the readme file for the AlphaFold Protein Structure Database (version 4).

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  Htomlinson14

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Commits on Oct 13, 2022

• [JAX] Import scipy submodules directly in code that uses them.

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  hawkinsp

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Commits on Oct 12, 2022

• Update version in colab

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  Htomlinson14

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Commits on Sep 22, 2022

• Fix missing comma in AlphaFold-Multimer BibTeX entry.

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  Augustin-Zidek

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  copybara-github

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Commits on Sep 21, 2022

• Bump version to 2.2.4

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  Htomlinson14

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Commits on Sep 16, 2022

• Fix incorrect length_scale argument

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  Htomlinson14

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  copybara-github

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  5352e29

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• Reduce size of docker image by cleaning apt, conda and pip caches

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  Htomlinson14

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  copybara-github

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  54c7358

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• Update Jax and Haiku versions

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  Htomlinson14

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Commits on Sep 7, 2022

• Merge pull request #2 from athbaltzis/patch-2

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  luisas

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  aaa23d6

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• Update run_predict.py

  athbaltzis

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  9e4466e

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Commits on Sep 6, 2022

• Fix precomputed flag

  luisas

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  095768b

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Commits on Aug 31, 2022

• Make using GPU in relaxation optional, with default not to use.

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  Htomlinson14

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Commits on Aug 25, 2022

• Bump the version to 2.2.3.

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  Augustin-Zidek

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• Pin Conda version to 4.13.0.

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  Augustin-Zidek

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• Split af2 msa and prediction

  luisas

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  4566488

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Commits on Aug 12, 2022

• Changed PAE json output to new format that matches the format used in AFDB.

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  DeepMind

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Commits on Jul 28, 2022

• Internal change

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  Augustin-Zidek

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  22fc0ee

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• Add a readme file for the AlphaFold Protein Structure Database.

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  Augustin-Zidek

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Commits on Jun 20, 2022

• Fix Dockerfile breakage due to google/jax#11142.

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  Tim Green

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  624a449

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Commits on Jun 14, 2022

• Migrate from `collections.Iterable` to `collections.abc.Iterable`.

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  tomwardio

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• Remove unneeded `__init__.py`

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  tomwardio

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  253d1fe

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• Add matplotlib test dependency so we can run notebook_utils_test.

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  tomwardio

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  725e79a

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• Move `disable_v2_behaviour()` to `setUp` to enable running tests in test suites.

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  tomwardio

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  5f4a9cc

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• Remove unused type hint from run_alphafold script.

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  tomwardio

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Commits on Jun 13, 2022

• Bump AlphaFold version to v2.2.2.

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  Augustin-Zidek

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  copybara-github

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• Replace period with hyphens in place, instead of declaring environment variable.

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  tomwardio

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  copybara-github

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  ab10514

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• Bump AlphaFold version to 2.2.1.

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  Augustin-Zidek

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  copybara-github

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• Pin protobuf version to 3.20.1.

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  Augustin-Zidek

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Commits on Jun 7, 2022

• Clarify that AlphaFold works only under Linux.

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  Augustin-Zidek

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Commits on May 31, 2022

• Add support for CUDA patch versions.

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  tomwardio

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  55c948c

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• Fix jax.tree_multimap deprecation warning.

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  Augustin-Zidek

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Commits on May 25, 2022

• Fix AlphaFold version in setup.py.

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  Augustin-Zidek

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  copybara-github

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  197bd19

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Commits on May 19, 2022

• Mention the workaround for the Nvidia public key issue in the README.

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  Augustin-Zidek

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  c42a96f

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Commits on Mar 21, 2022

• Silence some pytype errors.

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  rchen152

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  ed0886c

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