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Commits on Jan 12, 2026

• Enhance PDB download and filtering functions to support optional first model processing. Updated `download_pdb`, `filter_chain_cif`, and `filter_chain_pdb` functions to include a `first_model_only`…

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  Han Zhu

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Commits on Dec 8, 2025

• Refactor the code to prefetch the metadata from afdb, use ThreadPoolExecutor for speed up.

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  Han Zhu

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Commits on Oct 7, 2025

• Merge pull request #15 from kiharalab/bugfix/afdb

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  AntiMatter568

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• bugfix: AFDB url is now retreived from their API.

  ykagaya

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Commits on May 25, 2025

• Merge pull request #13 from parkjoonhong/main

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  wang3702

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• fixed cif file format for the biopython parser compatibility

  parkjoonhong

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Commits on Apr 9, 2025

• fix torch version bug

  AntiMatter568

  committed
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• Update Resize_Map.py

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  AntiMatter568

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• Update Resize_Map.py

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  AntiMatter568

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Commits on Apr 8, 2025

• Merge pull request #11 from kiharalab/test_scheduler

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  AntiMatter568

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• Fix bug in voxel size handling and grid size calculations.

  

  Han Zhu

  committed
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Commits on Mar 20, 2025

• fixed bug

  AntiMatter568

  committed
  6120db5

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Commits on Mar 19, 2025

• added cif conversion into the main.py

  AntiMatter568

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Commits on Nov 24, 2024

• swtich to support af3 cif format

  

  Xiao Wang

  committed
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Commits on Nov 23, 2024

• update on diffmodeler to support cif template

  

  Xiao Wang

  committed
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Commits on Nov 2, 2024

• Merge branch 'main' of https://github.com/kiharalab/DiffModeler

  

  Xiao Wang

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• add support to .rar file

  

  Xiao Wang

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Commits on Oct 30, 2024

• Merge pull request #9 from kiharalab/SWORDv2

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  wang3702

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• update README.md and pixi.toml

  AntiMatter568

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• update SWORD bin dir, add compile, add gitignore

  

  Han Zhu

  committed
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• remove unused imports

  AhaiMk01

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• Merge branch 'main' into SWORDv2

  

  Han Zhu

  committed
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• add pixi.toml for environment installation

  AhaiMk01

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• Use SWORD2 v2, speed up LDP recall using KDtree

  AhaiMk01

  committed
  b8c95f2

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• Update valid_diffmodeler.py

  wang3702

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Commits on Oct 29, 2024

• update on bfactor visualization

  

  Xiao Wang

  committed
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Commits on Oct 28, 2024

• fix domain splitting renum residue issue

  AntiMatter568

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Commits on Oct 24, 2024

• deal with bfactor to support pdb from scratch to visualize properly

  

  Xiao Wang

  committed
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• Merge branch 'main' of https://github.com/kiharalab/DiffModeler

  

  Xiao Wang

  committed
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• deal with bfactor to support pdb from scratch to visualize properly

  

  Xiao Wang

  committed
  a44e8e4

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Commits on Oct 21, 2024

• Update README.md

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  wang3702

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Commits on Oct 19, 2024

• Merge branch 'main' of https://github.com/kiharalab/DiffModeler

  

  Xiao Wang

  committed
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• add handler for sward failed case

  

  Xiao Wang

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Commits on Sep 8, 2024

• fix small dim bug in loss

  Zhang038

  authored
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• Merge branch 'main' of https://github.com/kiharalab/DiffModeler

  

  Xiao Wang

  committed
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