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Commits on Jan 30, 2026

• Add scaleAssay function to scale matrix rows

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Commits on Jan 2, 2026

• Refactor CWL review prompt to enhance clarity and structure, focusing on correctness, portability, and compliance with Seven Bridges Platform.

  jma1991

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  4f6d98f

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• Add documentation prompts and enhance pseudobulk DGE workflow comments for clarity

  jma1991

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  92e18fd

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• Add prompt files for code quality improvements and testing

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  9498355

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• Add PCA computation functions for bulk RNA-seq data analysis

  jma1991

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  bc9b668

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• Refactor format_deseq2_results function for improved readability and performance

  jma1991

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Commits on Dec 17, 2025

• Add volcano plot generation for RNA-seq analysis

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Commits on Dec 2, 2025

• Add port option to bioc-run commands

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  3519fb7

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• Define PORT variable for Bioconductor run

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Commits on Nov 21, 2025

• Add PCoA of cell types

  jma1991

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  0310722

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Commits on Nov 9, 2025

• Add initial bash profile and bashrc configuration

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  04813b2

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Commits on Nov 7, 2025

• Fix typo in bioc-rstudio target command

  jma1991

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  61d9820

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Commits on Nov 1, 2025

• Update

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  02a2c11

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• Update

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Commits on Oct 24, 2025

• Restructure and add recipes

  jma1991

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  4299e46

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Commits on Oct 15, 2025

• Initialize conda for future shell sessions

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Commits on May 16, 2025

• Update README.md

  jma1991

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Commits on Apr 2, 2025

• Add install-bioc.sh

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• Add install-conda.sh

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• Add install-docker.sh

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  d123700

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• Initial commit

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  ae88db0

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