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Commits on Aug 20, 2021

• Update FileIO.py

  jsmedmar

  authored
  adbdb74

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• 🐛 error in the original theta code

  jsmedmar

  authored
  93cbd17

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Commits on Aug 18, 2021

• Update plotResults.py

  jsmedmar

  authored
  3c88275

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Commits on Aug 14, 2020

• fix error when gaussian_NLL delta is an empty list

  

  Joe Zhou

  committed
  0c7ae5e

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Commits on Dec 3, 2019

• change delta calculation

  zhouyangyu

  authored
  989fac2

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Commits on Dec 2, 2019

• Prevent divide by zero error

  zhouyangyu

  authored
  8f0d28f

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Commits on Sep 26, 2019

• for unmatched genome, assume minimum stdev(sigma)

  

  Zhou

  committed
  ba2cb1d

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• change parameters to plot all solutions

  

  Zhou

  committed
  b8ca949

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Commits on Jul 31, 2017

• Fixed math domain error in BAF model

  

  Gryte Satas

  committed
  8f93e6c

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Commits on Mar 30, 2017

• Fixed indexing error in baf model

  

  Gryte Satas

  committed
  4f12904

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Commits on Feb 3, 2017

• Fixed error running BAF model when there are multiple solutions with eqv. read depth NLL

  

  Gryte Satas

  committed
  0d2ef5f

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Commits on Jan 23, 2017

• Update license in python files to not contain unicode characters

  

  Center for Computational Molecular Biology

  authored and

  Center for Computational Molecular Biology

  committed
  83cbc84

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Commits on Jan 16, 2017

• New License

  

  Center for Computational Molecular Biology

  authored and

  Center for Computational Molecular Biology

  committed
  c1c4572

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Commits on Dec 16, 2016

• Allow chrN format for chromosome input

  

  Gryte Satas

  committed
  8581140

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Commits on Dec 23, 2015

• Fixed CN Profile Enumeration Bug

  

  Gryte Satas

  committed
  77f62e9

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Commits on Oct 5, 2015

• Update for new release

  loesper

  committed
  030aea6

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Commits on Sep 29, 2015

• Add info about bnpy to Manual and update release notes.

  loesper

  committed
  b2e493b

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Commits on Sep 22, 2015

• Add new example data to repo and continue re-writing manual.

  loesper

  committed
  5e1cc39

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Commits on Sep 16, 2015

• Actually fix plot location

  loesper

  committed
  c2793e5

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• Update cluster plotting to save in to the correct directory

  loesper

  committed
  1d6fd48

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• Add additional criteria to model selection and start updates to manual

  loesper

  committed
  c995a3f

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• Fix bug where unable to find _meta_clustering directory

  loesper

  committed
  3146baf

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Commits on Sep 15, 2015

• Merge segment and master and temporary fix for meta_clustering crash problem

  loesper

  committed
  753cfda

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• Remove density bounds stuff from code.

  loesper

  committed
  1f16686

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Commits on Sep 12, 2015

• Added more changes so THetA uses allelic count data as input.

  

  Alexander Ashery

  committed
  348fb4f

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Commits on Sep 8, 2015

• Rearranging THetA to use SNP files as input (currently incomplete)

  

  Alexander Ashery

  committed
  2fff47a

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Commits on Aug 20, 2015

• Updated the RunTHetA bash script to just call the main code once

  gsatas

  committed
  6c3649c

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• Removed n from printed out parameters if not specified

  gsatas

  committed
  2cbf4dd

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• Moved model selection into main code

  gsatas

  committed
  65f0211

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• Moved model selection code into a method within the file

  gsatas

  committed
  28b43fd

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• Can now run Theta in old mode (if an n is specified via command line, or in new mode

  gsatas

  committed
  14a17b9

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• Can now run Theta in old mode (if an n is specified via command line, or in new mode

  gsatas

  committed
  3741236

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• Can now run Theta in old mode (if an n is specified via command line, or in new mode

  gsatas

  committed
  3e3d672

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• Renamed clusteringBAF.py to ClusteringBAF.py. Renamed terminology in ClusteringBAF.py/ClusterPlottingTools.py. Added usage disclaimer to code.

  

  Alexander Ashery

  committed
  abf742b

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• Passes bound information between runs with different n instead of reading in the bounds file

  gsatas

  committed
  2a4685f

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