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Commits on Sep 3, 2015

• Update README

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Commits on Jan 8, 2015

• [INTERNAL] further work on blast module

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Commits on Jan 6, 2015

• blast module now works with custom column support, but WITH_HEADER format still needs updating

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• [feature] seqan adaption of std::array

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• [feature] seqan adaption of std::array

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Commits on Jan 5, 2015

• [feature] new blast module still not done

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Commits on Dec 19, 2014

• pre-christmas

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Commits on Dec 12, 2014

• [feature] began adding support for custom columns to BLAST module

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• bump version number

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• [fix] manually select print-parameter instead of relying MACROs [fix build on Linux]

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Commits on Dec 11, 2014

• [feature] make ready for release 0.4.6

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• Merge remote-tracking branch 'origin/feature/lambda' into feature/lambda

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• [fix] types so they work on Darwin as well

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• [fix] types so they work on Darwin as well

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Commits on Dec 5, 2014

• activate FASTBUILD again and update CHANGELOG post-release

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• deactivate FASTBUILD for release of 0.4.5

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Commits on Dec 4, 2014

• [feature] add tmp-dir selection to options and set CWD as default

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• [fix] make mergesort the default again and reactivate its codepaths

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Commits on Dec 3, 2014

• [feature] added multiple sorting algorithms, made bucketwise quicksort default

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Commits on Nov 21, 2014

• undo stupid type

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• forgot to add new file

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• [feature] add progress tracked suffix array creation and different algo choice

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Commits on Nov 19, 2014

• [feature] give indexer the possibility to quicksort instead of skew; cleanup the help pages

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• [fix] make sa index creation overloadable

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• [FIX] fixed #519

  

  David Weese

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Commits on Nov 11, 2014

• use global fm-index spec

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• add more debug in case of failure

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• add download links for 0.4.1

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Commits on Nov 10, 2014

• bump version number

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• [doc] update docs

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• [fix] default index type of indexer was still SA

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Commits on Nov 7, 2014

• minor formatting fix

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• deactive FASTBUILD, cleanup

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• change some defaults, cleanup CLI

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• update README prior to release

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