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7 stars written in Java
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《剑指 Offer》《图解算法数据结构》《Krahets 笔面试精选 88 题》Python, Java, C++ 解题代码

Java 8,236 885 Updated Dec 30, 2025

Official code repository for GATK versions 4 and up

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A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Java 1,062 382 Updated Mar 24, 2026

Graph+Semantics: Import/Export RDF from Neo4j. SHACL Validation, Model mapping and more.... If you like it, please ★ ⇧

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mzmine source code repository

Java 273 160 Updated Apr 13, 2026

A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)

Java 55 11 Updated Mar 31, 2026

csf fork of fastqc for usage on selected reads of unaligned bam file

Java 48 40 Updated Mar 7, 2013