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Commits on May 22, 2023

• Markup tweaks in NEWS.rst

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  peterjc

  authored
  c93bacf

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• Refactor removeprefix and removesuffix for ABC work

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  peterjc

  committed
  f39ccb4

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• Adds removeprefix and removesuffix to Seq

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  Benedict Carling

  authored and

  peterjc

  committed
  c990eb6

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• Dropping Python 3.7 support

  peterjc

  committed
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• Reduce Python range for macOS and Windows testing

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  peterjc

  committed
  fc61f95

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• Drop Python 3.7 in GitHub Actions

  peterjc

  committed
  0a26894

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• Clarify NEWS vs DEPRECATED content

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  peterjc

  committed
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Commits on May 21, 2023

• Bigbed writer (#4311)

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  4 peopleauthored
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• PDBList.py writes files with matching extensions (#4288)

  PyCreatine

  authored
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Commits on May 19, 2023

• Tag first time contributors in recent releases

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  peterjc

  authored
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Commits on May 18, 2023

• Avoid reportlab v4 under CircleCI (#4305)

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  peterjc

  authored
  32fe2bb

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• Fix latex verbatim

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  peterjc

  authored
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Commits on May 15, 2023

• Fix formatting of variable name in docstring

  

  kamurani

  authored and

  peterjc

  committed
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Commits on May 2, 2023

• MultipleSeqAlignment del method for removing sequences by index or slice (#4293)

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  siddhartasr10

  authored
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Commits on Apr 23, 2023

• Standardize Numpy imports (#4258)

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  pvalle6

  authored
  024a441

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• [pre-commit.ci] autoupdate (#4207)

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  pre-commit-ci[bot]

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• Extend special case top level taxonomy terms

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  peterjc

  committed
  07697d1

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• Special case single entry GenBank lineage

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  peterjc

  committed
  0d353b6

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• Update build/test instructions to match README

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  peterjc

  committed
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Commits on Apr 21, 2023

• Fix and update calculation of secondary structure fraction (#4273)

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  arpansahoo

  authored
  9c84e10

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Commits on Apr 20, 2023

• update

  

  Michiel de Hoon

  authored and

  peterjc

  committed
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Commits on Apr 17, 2023

• Adding self to contributors for Biopython 1.82

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  peterjc

  authored
  162ce57

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• Renable CircleCI Orb for codecov

  peterjc

  committed
  05b381e

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• PyPI codecov package has been removed

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  peterjc

  committed
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Commits on Apr 16, 2023

• Update black here to match pre-commit setup

  peterjc

  authored
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Commits on Apr 6, 2023

• Fix Bio.bgzf file mode check for BytesIO (#4270)

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  terrycojones

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Commits on Apr 5, 2023

• Fix auth_residues=False for MMCIFParser (#4277)

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  jgreener64

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• Catch bad GenBank location failing regex

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  peterjc

  committed
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Commits on Mar 23, 2023

• Standardize on import numpy as np (#4259)

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  BabaYaga1221

  authored
  f3a6b43

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Commits on Mar 15, 2023

• Sanitize CREATE_VIEW lines from Blast XML outputs. (#4256)

  JoaoRodrigues

  authored
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Commits on Mar 12, 2023

• fix misleading comment in CompoundLocation.end documentation.

  

  seanrjohnson

  authored and

  peterjc

  committed
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Commits on Mar 8, 2023

• Standardize imports in Doc/ (#4255)

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  pvalle6

  authored
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Commits on Mar 6, 2023

• Fix DNA_NN4 thermodynamic table (#4240)

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  vladkuz-vk

  authored
  2053bdd

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Commits on Mar 3, 2023

• Update .flake8 to ignore Bugbear's new B028 (#4253)

  MarkusPiotrowski

  authored
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Commits on Mar 2, 2023

• context manager for Bio.Align.parse (#4251)

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  mdehoon

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