Graph Neural Network Library for PyTorch

Quickly rewrite git repository history (filter-branch replacement)

High accuracy RAG for answering questions from scientific documents with citations

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

Make images look as if they are made out of 1x1 LEGO blocks

Simplified interface for TensorFlow (mimicking Scikit Learn) for Deep Learning

Implementation of Alphafold 3 from Google Deepmind in Pytorch

Recipe for a General, Powerful, Scalable Graph Transformer

A console script that allows you to easily update multiple git repositories at once

Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry

OmegaFold Release Code

Python utilities for Manubot: Manuscripts, open and automated

Official repository for the ProteinGym benchmarks

Draw UpSet plots with Matplotlib

BEELINE: evaluation of algorithms for gene regulatory network inference

ChemNLP project

Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"

LLM for Drug Editing, ICLR 2024

bioinformatics tools running on modal

Generate a diff between two tabular datasets expressed in CSV files.

A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)

ProteinChat: A frontier protein-language generative model designed to decode the molecular language of proteins.

bioinformatics plotting and tools

Template job submissions using GPUs in CHTC

A tool for automated uploading and version management of scientific data to Zenodo

This repository contains ClassificaIO, a Python package that provides a graphical user interface (GUI) for machine learning algorithms from scikit-learn.

Dimensionality reduction for single cell RNA-seq data