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Commits on Mar 31, 2020

• Merge pull request #2 from atks/master

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  MelanieBroutin

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  f1c49a7

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• Merge pull request #1 from SeqOne/vt_normalisation_donot_remove_inconsistent_reference_sequences_in_final_vcf

  Show description for 74e2f96
  MelanieBroutin

  authored
  74e2f96

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• add toupper

  MelanieBroutin

  committed
  3253910

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Commits on Mar 10, 2020

• updated htslib

  atks

  committed
  2187ff6

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Commits on Nov 15, 2019

• removed stray comment */

  atks

  committed
  88da436

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Commits on Oct 23, 2019

• updated test outputs for decompose_blocksub

  atks

  committed
  d15d007

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• Merge pull request #101 from SeqOne/master

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  atks

  authored
  1fe34f1

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• updated htslib and made some chabnges to avoid compiler warnings

  atks

  committed
  4989f52

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Commits on Jul 2, 2019

• Add option to set MNV max distance

  

  jaudoux

  committed
  b9fe190

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• Add test for MNVs

  

  jaudoux

  committed
  8e29b5f

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• updated htslib

  atks

  committed
  0b47e9f

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Commits on Jun 25, 2019

• Add option to keep MNV as unique records in decompose_blocksub

  

  jaudoux

  committed
  1f9bf96

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Commits on Jun 15, 2019

• added checking for bcf_sync_hdr in various places.

  atks

  committed
  db57494

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• updated htslib

  atks

  committed
  9fb8148

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Commits on Dec 20, 2018

• updated htslib

  atks

  committed
  9e56e52

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Commits on Aug 3, 2018

• ported over annotate_indels3.*

  atks

  committed
  4ae33dc

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Commits on Aug 1, 2018

• updated htslib and modifications to bcf_ordered_writer

  atks

  committed
  f6d2b5d

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Commits on Jul 15, 2018

• removed faidx_t definition in hts_utils.h

  atks

  committed
  fb0288b

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Commits on Jul 13, 2018

• misc. changes to suppress warnings during compilation

  atks

  committed
  0244f6f

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• updated faidx_fetch_uc_seq

  atks

  committed
  6a0e555

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• misc changes

  atks

  committed
  a210598

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Commits on Jun 7, 2018

• updated htslb

  atks

  committed
  ee9f613

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Commits on May 9, 2018

• for mac portability

  atks

  committed
  6b31b44

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• compatibility for mac

  atks

  committed
  9d36ace

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• fixed referencing bug

  atks

  committed
  9a46462

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• changed exports to relative path

  atks

  committed
  4ffc75b

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Commits on May 8, 2018

• readded libdeflate

  atks

  committed
  b9f4abf

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• remove libdeflate

  atks

  committed
  a968992

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• added libdeflate

  atks

  committed
  e07f740

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Commits on May 4, 2018

• fixed bug on updating integer type INFO fields of variable length G

  atks

  committed
  97aeda1

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Commits on May 1, 2018

• updated htalib

  atks

  committed
  f084322

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Commits on Apr 6, 2018

• edits to documentation on incorporating start coordinates overlap checking only

  atks

  committed
  60e7488

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Commits on Apr 5, 2018

• added Makefile.default for manual rollback

  atks

  committed
  407f152

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Commits on Apr 3, 2018

• updated htslib

  atks

  committed
  1f20c51

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• added pseudo code for liftover.

  atks

  committed
  b29da11

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