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Commits on Mar 2, 2023

• fixing bug happening if genes of different species are detected in the isolate

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Commits on Feb 2, 2023

• Update README.md

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Commits on May 27, 2022

• updating database / May2022

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Commits on Jan 18, 2021

• Update README.md

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Commits on Dec 29, 2020

• MLST database updated (metamlstDB_2021). DB now downloaded through Zenodo

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• extended metamlst-index special fields ignore-list

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Commits on Sep 22, 2020

• Merge branch 'master' of https://github.com/SegataLab/metamlst

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• added support for BioPython >= 1.78

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• Update README.md

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• Update README.md

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Commits on Aug 10, 2020

• Update README.md

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Commits on Aug 7, 2020

• mlst.py now works in python3

  azufre451

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Commits on May 21, 2020

• corrected bug when using custom database instead of default one

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Commits on Feb 21, 2020

• url correct

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• fixing dropbox downloads

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Commits on Feb 13, 2020

• added cmseq

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Commits on Jul 5, 2019

• updated DB (2019)

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• updated DB (2019)

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Commits on Jun 15, 2018

• Added tag 1.2 for changeset 84b636639ba3

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• consensus-list-cast bugfix

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• adding cmseq subrepo, hgignore

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• Skip botwtie2-db creation if db is already present

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Commits on Jun 13, 2018

• README.md edited online with Bitbucket

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• database update, python3 support, fixed bug in consensus calling, pysam 0.14, db deleted from repo (-> downloads)

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Commits on Apr 27, 2017

• added filtering on metamlst-index

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Commits on Apr 26, 2017

• added db check

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• Added backwards samtools compatibility (<1.x), bugfixes

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• Added backwards samtools compatibility (<1.x), bugfixes

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• Addedd backwards samtools compatibility (<1.x), bugfixes

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Commits on Apr 19, 2017

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• metaMLST_functions.py edited online with Bitbucket

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• metaMLST_functions.py edited online with Bitbucket

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• metamlst.py edited online with Bitbucket

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• metamlst.py edited online with Bitbucket

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• metamlst.py edited online with Bitbucket

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