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Commits on Dec 11, 2024

• Updated/added documentation to older files

  RPINerd

  committed
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Commits on Dec 7, 2024

• Merge pull request #825 from mervebduman/main

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  marcelm

  authored
  3c57156

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• fix typo in installation.rst

  mervebduman

  authored
  5d8da0c

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Commits on Dec 6, 2024

• Create an index for up to three errors instead of two

  marcelm

  committed
  2ec0c41

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• Fix: discard_(un)trimmed were always none in JSON report

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  marcelm

  committed
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Commits on Nov 18, 2024

• Changelog

  marcelm

  committed
  c601ad8

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• Merge pull request #821 from marcelm/rhpvorderman-patch-1

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  marcelm

  authored
  092d4a1

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• Fix divide by zero error

  rhpvorderman

  authored
  2b9f87c

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Commits on Nov 14, 2024

• Fix _adapter_statistics_as_json bug with one_line=True

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  marcelm

  committed
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Commits on Nov 13, 2024

• Make tokenizer able to parse round parentheses

  marcelm

  committed
  21956dc

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• Ensure doctests are run

  marcelm

  committed
  10ec666

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• Rephrasing

  marcelm

  committed
  10aad60

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• Merge pull request #812 from rhpvorderman/multithread_bam_read

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  marcelm

  authored
  628ce98

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• Merge branch 'main' into multithread_bam_read

  marcelm

  authored
  8edb888

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• Fix statistics for paired-end --revcomp

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  marcelm

  committed
  ff5ba46

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Commits on Nov 12, 2024

• Merge pull request #818 from marcelm/z-default

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  marcelm

  authored
  0530dfa

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• Allow multithreaded BAM reading

  rhpvorderman

  committed
  1aae919

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• Reproduce error where bam cannot be read multithreaded

  rhpvorderman

  committed
  f27c2d6

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• Make --compression-level=1 the default

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  marcelm

  committed
  8d67c7c

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• Support Python 3.13

  marcelm

  committed
  6530114

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• Drop support for Python 3.8

  marcelm

  committed
  d390225

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Commits on Sep 16, 2024

• Describe why linked adapters are better than -g/-a separately

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  marcelm

  committed
  9ec0b58

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• Move some sections from the guide to the reference

  marcelm

  committed
  35ddb8b

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Commits on Sep 13, 2024

• Merge pull request #796 from rhpvorderman/simpleraverage

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  marcelm

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Commits on Sep 4, 2024

• Unshallow in RTD

  marcelm

  committed
  1b28468

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Commits on Aug 21, 2024

• Mention osx-arm64 in changelog

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  marcelm

  committed
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Commits on Jul 30, 2024

• Add CITATION.cff to manifest

  marcelm

  committed
  ed5180e

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Commits on Jul 23, 2024

• Simplify expected errors function

  rhpvorderman

  committed
  f31a42c

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Commits on Jun 25, 2024

• Move some compression-related tests to separate module

  marcelm

  committed
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Commits on Jun 20, 2024

• More helpful error message on unrecognized input file format

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  marcelm

  committed
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Commits on Jun 19, 2024

• Version 4.9

  marcelm

  committed
  9276a89

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Commits on Jun 17, 2024

• Decrease too long min. overlap to adapter length

  marcelm

  committed
  d6e2cbd

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Commits on Jun 16, 2024

• Test on macOS 14 (arm64 runner)

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  marcelm

  committed
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• Add --action=crop

  marcelm

  committed
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Commits on Jun 14, 2024

• Remove unused test files

  marcelm

  committed
  b5e74c1

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