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Commits on Nov 20, 2023

• Update readme text about VAMB (#31).

  AndreLamurias

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Commits on Nov 2, 2023

• version bump

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• fix issue #32 and #33

  AndreLamurias

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Commits on Sep 15, 2023

• Merge pull request #30 from MicrobialDarkMatter/dependabot/pip/mlflow-2.6.0

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• Bump mlflow from 2.3.1 to 2.6.0

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Commits on Jul 18, 2023

• Update graphmb and mlflow versions

  AndreLamurias

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• Add writebins option to write bins to fasta files

  AndreLamurias

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Commits on Jul 17, 2023

• fix markers argument

  AndreLamurias

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• move data files

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Commits on Mar 31, 2023

• upgrade tf and mlflow

  AndreLamurias

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Commits on Feb 6, 2023

• add results files

  AndreLamurias

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Commits on Feb 3, 2023

• Merge branch 'main' of https://github.com/MicrobialDarkMatter/GraphMB

  AndreLamurias

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• Improve documentation

  AndreLamurias

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• Set number of VAE train epochs (fixes #19)

  AndreLamurias

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• Update issue templates

  AndreLamurias

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Commits on Feb 2, 2023

• VAE clustering bug fix

  AndreLamurias

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Commits on Feb 1, 2023

• version bump

  AndreLamurias

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• simplify instalation

  AndreLamurias

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• Fix running without markers

  AndreLamurias

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Commits on Jan 31, 2023

• run without eval metric

  AndreLamurias

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• fix gpu clustering

  AndreLamurias

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• default experiment name

  AndreLamurias

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• update params

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• integrate CCVAE code

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Commits on Jan 30, 2023

• Merge branch 'main' into 0.2.0-candidate

  AndreLamurias

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• simplify setup

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• release candidate

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• Move kernel file

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• add kernel file

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• Add benchmarks to separate dir

  AndreLamurias

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• Integrate vamb clustering

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Commits on Dec 16, 2022

• train SCG separately

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Commits on Dec 5, 2022

• training improvements

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Commits on Nov 29, 2022

• cluster contig datasets

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• print top noise pairs

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