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Commits on Jun 12, 2025

• chore: bumped version number to 1.2.4

  donovan-h-parks

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• Merge pull request #376 from Louis-MG/master

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  donovan-h-parks

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  249821b

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• Merge pull request #412 from noelle-haddad/fix/prodigal-error-handling

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  donovan-h-parks

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Commits on May 12, 2025

• Fix: Allow Prodigal option '-p meta' by not exiting on first failure

  

  Noëlle HADDAD

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Commits on Sep 3, 2024

• Update README.md

  donovan-h-parks

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• Update README.md

  donovan-h-parks

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• Update README.md

  donovan-h-parks

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Commits on Jun 25, 2024

• feat: changes to support numpy 2.0; better handling of non-zero return codes from external programs

  donovan-h-parks

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Commits on Jun 27, 2023

• added the dockerfile for checkm

  Louis-MG

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Commits on Oct 31, 2022

• Support gzipped protein files as input (thanks to alienzj for the PR)

  donovan-h-parks

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• Merge pull request #354 from alienzj/support_compressed_protein

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  donovan-h-parks

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Commits on Oct 26, 2022

• Support gziped proteins as input

  alienzj

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Commits on Aug 3, 2022

• Bumped version number.

  donovan-h-parks

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• Merge pull request #333 from misialq/issue-272

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  donovan-h-parks

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• Merge branch 'master' into issue-272

  donovan-h-parks

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Commits on Apr 30, 2022

• Modified how bin IDs are identified to improve output tables

  donovan-h-parks

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Commits on Apr 28, 2022

• Rename private class methods

  misialq

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Commits on Apr 21, 2022

• Merge branch 'master' of https://github.com/Ecogenomics/CheckM

  donovan-h-parks

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• Fixed bug with missing bCalledGenes flag that was impacting a number of commands.

  donovan-h-parks

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• Merge pull request #331 from alienzj/fix_binFiles_bugs

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  donovan-h-parks

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• avoid UnboundLocalError

  alienzj

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Commits on Apr 14, 2022

• fixed support for gzip input FASTA files

  donovan-h-parks

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Commits on Apr 10, 2022

• - accepted PRs allowing bins to be specified via an input table, fixing import error with prettytable, and enhancing identification of bins via their extension

  donovan-h-parks

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• Merge pull request #322 from jjacobson95/patch-1

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  donovan-h-parks

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• Merge pull request #329 from alienzj/support_table_input

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  donovan-h-parks

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• fix API useage

  alienzj

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• Support table as input for checkm bins

  alienzj

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Commits on Apr 9, 2022

• Allow CheckM data path to be set through the environmental variable CHECKM_DATA_PATH

  donovan-h-parks

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• added maxibor's PR to allow path to DATA_CONFIG file to be set

  donovan-h-parks

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Commits on Mar 2, 2022

• Merge pull request #326 from maxibor/master

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  donovan-h-parks

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Commits on Mar 1, 2022

• change setRoot argument order

  maxibor

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• configFile can also be specified by user

  maxibor

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Commits on Jan 22, 2022

• Fix prettytable.

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  jjacobson95

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Commits on May 11, 2021

• Merge branch 'master' of github.com:Ecogenomics/CheckM

  donovan-h-parks

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• Fix to coding density calculation which was off by 1 base per sequence.

  donovan-h-parks

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