Skip to content
Permalink

Comparing changes

Choose two branches to see what’s changed or to start a new pull request. If you need to, you can also or learn more about diff comparisons.

Open a pull request

Create a new pull request by comparing changes across two branches. If you need to, you can also . Learn more about diff comparisons here.
base repository: ljwharbers/nextflow-gpseq
Failed to load repositories. Confirm that selected base ref is valid, then try again.
Loading
base: main
Choose a base ref
...
head repository: BiCroLab/nextflow-gpseq
Failed to load repositories. Confirm that selected head ref is valid, then try again.
Loading
compare: main
Choose a head ref
Checking mergeability… Don’t worry, you can still create the pull request.
  • 15 commits
  • 7 files changed
  • 2 contributors

Commits on May 5, 2025

  1. Update main.nf

    filtering out N-UMIs
    salvzzz committed May 5, 2025
    Configuration menu
    Copy the full SHA
    78c0b23 View commit details
    Browse the repository at this point in the history
  2. Update main.nf

    escape awk $
    salvzzz committed May 5, 2025
    Configuration menu
    Copy the full SHA
    79e6b45 View commit details
    Browse the repository at this point in the history
  3. Update nextflow.config

    salvzzz committed May 5, 2025
    Configuration menu
    Copy the full SHA
    52bde14 View commit details
    Browse the repository at this point in the history
  4. bugfix

    (1) bugfix: removed extra space in .bed.gz files, found in addition to the intended tab spacers; (2) replaced "FS" with "," in awk for readability
    salvzzz committed May 5, 2025
    Configuration menu
    Copy the full SHA
    d18e324 View commit details
    Browse the repository at this point in the history
  5. Add files via upload

    salvzzz committed May 5, 2025
    Configuration menu
    Copy the full SHA
    e681f2c View commit details
    Browse the repository at this point in the history
  6. Update export_output in gpseq-radical.R

    (1) removed "+" symbols from output file names; (2) fix to avoid scientific notation in coordinates; (3) removed headers from output files; (4) minor readability changes
    salvzzz committed May 5, 2025
    Configuration menu
    Copy the full SHA
    96b9d0b View commit details
    Browse the repository at this point in the history
  7. Update gpseq-radical.R

    fix: script won't crash if output folder already exists
    salvzzz committed May 5, 2025
    Configuration menu
    Copy the full SHA
    e4a3174 View commit details
    Browse the repository at this point in the history
  8. Update gpseq-radical.R

    removed some newlines in some short blocks
    salvzzz committed May 5, 2025
    Configuration menu
    Copy the full SHA
    809809d View commit details
    Browse the repository at this point in the history
  9. Update gpseq-radical.R

    input colnames are now assigned within this code, rather than by previous steps of the pipeline (hence they won't be required as headers in ".bed.gz" files)
    salvzzz committed May 5, 2025
    Configuration menu
    Copy the full SHA
    6f73f64 View commit details
    Browse the repository at this point in the history
  10. Update main.nf

    process EXTRACT: barcode length is now automatically inferred from input samplesheet, allowing different lengths (if present)
    salvzzz committed May 5, 2025
    Configuration menu
    Copy the full SHA
    64f230c View commit details
    Browse the repository at this point in the history
  11. Update README.md

    adjusting some descriptions (p1)
    salvzzz committed May 5, 2025
    Configuration menu
    Copy the full SHA
    ed26f69 View commit details
    Browse the repository at this point in the history
  12. Update samplesheet.csv

    salvzzz committed May 5, 2025
    Configuration menu
    Copy the full SHA
    376f500 View commit details
    Browse the repository at this point in the history
  13. Update README.md

    salvzzz committed May 5, 2025
    Configuration menu
    Copy the full SHA
    195dbc5 View commit details
    Browse the repository at this point in the history
  14. Update README.md

    salvzzz authored May 5, 2025
    Configuration menu
    Copy the full SHA
    937a512 View commit details
    Browse the repository at this point in the history

Commits on Aug 4, 2025

  1. Create LICENSE

    ywhins authored Aug 4, 2025
    Configuration menu
    Copy the full SHA
    56c990a View commit details
    Browse the repository at this point in the history
Loading